This is a common problem with guys living near or with their parents.
Do you fulfill Kibud Av Ve'aim and go to shul with your father, or is it preferred to pray at a place where you feel more spiritual and can pray with more kevanah and motivation?
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mishnah berurah 90 28 qoutes radvaz vol 3 siman 472 that it is more important to daven in a place you can have kavanah then to daven with rov am