The Tosfos Yom Tov discusses some of you issues you raise and therefore gives his a different interpretation.
Short summary: Rabbi Elazar is only arguing about how much isthe necessary amount of water to be liable. According to R"E don'tone doesn't need any minimum measurement to be liable but. However, according to R"M you need three luginlugin the amount he holds is necessary for nisuch hamayim on sukkos.