שלומי is a Common nickname for שלמה.
I knew a man called פלטיאל.
If אלידד and אלדד has the same meaning, so it is still used.
אליצפן , עמיהוד isare rarely used.
Names come and go... It's a matter of fashion. Do you think that we use the Nessim names less then we use other biblical names?
I don't think there is a special dislike for those names, you can call your son פדהאל (awesome name!)